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data visualization
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12
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Deseq2 rlog or 'regular' normalization?
Deseq2
rlog transformation
data visualization
8.6 years ago
sunil.mangalam
• 0
0
votes
1
reply
2.5k
views
Input file of NGS data for Pathview
rnaseq
pathview
data visualization
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.5 years ago by
amoltej
▴ 10
1
vote
1
reply
1.9k
views
Using pathview with uncommon species leads to Errors
pathview
Kegg
rnaseq
data visualization
updated 7.8 years ago by
Luo Weijun
★ 1.6k • written 7.8 years ago by
rafre
• 0
0
votes
1
reply
1.9k
views
Pathview: visualization of data
pathview
data visualization
updated 8.2 years ago by
Luo Weijun
★ 1.6k • written 8.2 years ago by
Guido Hooiveld
★ 3.9k
0
votes
0
replies
1.6k
views
Job:
Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics
bioinformatician job
data visualization
Job
8.6 years ago
Doe, Aimee
▴ 40
1
vote
0
replies
1.1k
views
Job:
Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science
data visualization
machine learning
cancer
Job
6.1 years ago • updated 5.9 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
827
views
Visualize FlowSet by Date
FlowSet
data visualization
cellcounts
6.9 years ago
Maria
• 0
4
votes
3
replies
716
views
RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2
RNA-Seq
uniform distribution
data visualization
updated 4.2 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
Ndimensional
▴ 20
0
votes
1
reply
621
views
DNA Deferential metheylation
data visualization
7.4 years ago
tarek_2050
• 0
0
votes
0
replies
460
views
how to construct mds plot of differentially expressed genes?
differentially expressed genes
mds plot
data visualization
5.1 years ago
pratikshasharma47
• 0
10 results • Page
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Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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